{ "_id": "6abcc4ad99f7aa8c6aa4b771", "Package": "rstanbdp", "Title": "Bayesian Deming Regression for Method Comparison", "Version": "0.0.2", "Maintainer": "Giorgio Pioda ", "Authors@R": "person(\"Giorgio\", \"Pioda\", ,\"gfwp@ticino.com\",\nrole = c(\"aut\",\"cre\"), comment=c(ORCID=\"0000-0002-8714-8678\"))", "Description": "Regression methods to quantify the relation between two\nmeasurement methods are provided by this package. The focus is\non a Bayesian Deming regressions family. With a Bayesian method\nthe Deming regression can be run in a traditional fashion or\ncan be run in a robust way just decreasing the degree of\nfreedom d.f. of the sampling distribution. With d.f. = 1 an\nextremely robust Cauchy distribution can be sampled. Moreover,\nmodels for dealing with heteroscedastic data are also provided.\nFor reference see G. Pioda (2024)\n.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.1", "Biarch": "true", "SystemRequirements": "GNU make", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev", "Repository": "https://piodag.r-universe.dev", "Date/Publication": "2024-02-22 22:37:54 UTC", "RemoteUrl": "https://github.com/piodag/rstanbdp", "RemoteRef": "HEAD", "RemoteSha": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-09-30 07:31:59 UTC", "User": "root" }, "Author": "Giorgio Pioda [aut, cre] (ORCID:\n)", "_user": "piodag", "_type": "src", "_file": "rstanbdp_0.0.2.tar.gz", "_fileid": "https://r2.ropensci.org/3be5dc6f8d9cd91cdfc00b2b5537a15ee736ff58e6ac50b7c867c74e9703299d", "_filesize": 158247, "_sha256": "3be5dc6f8d9cd91cdfc00b2b5537a15ee736ff58e6ac50b7c867c74e9703299d", "_expires": "2027-01-08T08:13:31.000Z", "_created": "2026-09-30T07:31:59.000Z", "_published": "2026-09-30T08:13:33.352Z", "_jobs": [ { "job": 109787289670, "time": 400, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11083811138" }, { "job": 109787289655, "time": 445, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11083363038" }, { "job": 109787289662, "time": 391, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11083328112" }, { "job": 109787289730, "time": 439, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11083022924" }, { "job": 109787289772, "time": 344, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11084496982" }, { "job": 109787289650, "time": 679, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11084155930" }, { "job": 109787289760, "time": 335, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11084477383" }, { "job": 109787289928, "time": 597, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11084776275" }, { "job": 109785211001, "time": 404, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11083302015" }, { "job": 109787289692, "time": 318, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11083775987" }, { "job": 109787289837, "time": 588, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11083114920" }, { "job": 109787289856, "time": 584, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11083393389" }, { "job": 109787289713, "time": 434, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11083741683" }, { "job": 109787289939, "time": 550, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11083257818" }, { "job": 109787289812, "time": 498, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11083766574" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906", "_status": "success", "_upstream": "https://github.com/piodag/rstanbdp", "_commit": { "id": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "author": "piodag ", "committer": "piodag ", "message": "Submission data\n", "time": 1708641474 }, "_maintainer": { "name": "Giorgio Pioda", "email": "gfwp@ticino.com", "login": "piodag", "linkedin": "in/piodag", "orcid": "0000-0002-8714-8678", "description": "Dr sc. nat. ETH, DAS appl. stat. ETH", "uuid": 71730671 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "BH", "version": ">= 1.66.0", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 0.12.0", "role": "LinkingTo" }, { "package": "RcppEigen", "version": ">= 0.3.3.3.0", "role": "LinkingTo" }, { "package": "RcppParallel", "version": ">= 5.0.1", "role": "LinkingTo" }, { "package": "rstan", "version": ">= 2.18.1", "role": "LinkingTo" }, { "package": "StanHeaders", "version": ">= 2.18.0", "role": "LinkingTo" }, { "package": "methods", "role": "Imports" }, { "package": "Rcpp", "version": ">= 0.12.0", "role": "Imports" }, { "package": "RcppParallel", "version": ">= 5.0.1", "role": "Imports" }, { "package": "rstan", "version": ">= 2.18.1", "role": "Imports" }, { "package": "rstantools", "version": ">= 2.4.0", "role": "Imports" }, { "package": "rrcov", "role": "Imports" }, { "package": "mixtools", "role": "Imports" }, { "package": "bayestestR", "role": "Imports" }, { "package": "KernSmooth", "role": "Imports" } ], "_owner": "piodag", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "piodag", "count": 18, "uuid": 71730671 } ], "_userbio": { "uuid": 71730671, "type": "user", "name": "Giorgio Pioda", "followers": 1, "description": "Dr sc. nat. ETH, DAS appl. stat. ETH" }, "_downloads": { "count": 290, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rstanbdp" }, "_devurl": "https://github.com/piodag/rstanbdp", "_searchresults": 0, "_topics": [ "onetbb", "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/rstanbdp.html" ], "_homeurl": "https://github.com/piodag/rstanbdp", "_realowner": "piodag", "_cranurl": true, "_releases": [ { "version": "0.0.2", "date": "2024-02-23" }, { "version": "0.0.3", "date": "2024-07-26" } ], "_exports": [ "bdpCalcResponse", "bdpExtract", "bdpPairs", "bdpPlot", "bdpPlotBE", "bdpPlotResiduals", "bdpPrint", "bdpreg", "bdpTraceplot" ], "_datasets": [ { "name": "glycHem", "title": "Method comparison of glycated hemoglobin measurement", "object": "glycHem", "file": "glycHem.rda", "class": [ "data.frame" ], "fields": [ "Method1", "Method2" ], "rows": 20, "table": true, "tojson": true } ], "_help": [ { "page": "rstanbdp-package", "title": "The 'rstanbdp' package.", "topics": [ "rstanbdp-package", "rstanbdp" ] }, { "page": "bdpCalcResponse", "title": "Plot the calculated Y response with CI from the full Bayesian posterior distribution", "topics": [ "bdpCalcResponse" ] }, { "page": "bdpExtract", "title": "Extract relevant data from the Bayesian Deming regression", "topics": [ "bdpExtract" ] }, { "page": "bdpPairs", "title": "Pairs plot of the full posterior predictors", "topics": [ "bdpPairs" ] }, { "page": "bdpPlot", "title": "Plot Bayesian Deming regression and the confidence intervals from the full posterior distribution", "topics": [ "bdpPlot" ] }, { "page": "bdpPlotBE", "title": "Plot regression posterior pairs with CI Box and MD ellipses", "topics": [ "bdpPlotBE" ] }, { "page": "bdpPlotResiduals", "title": "Plot studentized residuals from the Bayesian Deming regression", "topics": [ "bdpPlotResiduals" ] }, { "page": "bdpPrint", "title": "Print summary of sampled data", "topics": [ "bdpPrint" ] }, { "page": "bdpreg", "title": "Bayesian Deming Pioda Regression for two method comparison with Rstan", "topics": [ "bdpreg" ] }, { "page": "bdpTraceplot", "title": "Plot a traceplot of the sampled chains", "topics": [ "bdpTraceplot" ] }, { "page": "bmpMD", "title": "Mahalanobis distance for the posterior pairs", "topics": [ "bmpMD" ] }, { "page": "glycHem", "title": "Method comparison of glycated hemoglobin measurement", "topics": [ "glycHem" ] } ], "_readme": "https://github.com/piodag/rstanbdp/raw/HEAD/README.md", "_rundeps": [ "abind", "askpass", "backports", "base64enc", "bayestestR", "BH", "bslib", "cachem", "callr", "checkmate", "cli", "cpp11", "crosstalk", "curl", "data.table", "datawizard", "DEoptimR", "desc", "digest", "distributional", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "gridExtra", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "inline", "insight", "isoband", "jquerylib", "jsonlite", "kernlab", "KernSmooth", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "loo", "magrittr", "MASS", "Matrix", "matrixStats", "memoise", "mime", "mixtools", "mvtnorm", "nlme", "numDeriv", "openssl", "otel", "pcaPP", "pillar", "pkgbuild", "pkgconfig", "plotly", "posterior", "processx", "promises", "ps", "purrr", "QuickJSR", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppEigen", "RcppParallel", "rlang", "rmarkdown", "robustbase", "rrcov", "rstan", "rstantools", "S7", "sass", "scales", "segmented", "StanHeaders", "stringi", "stringr", "survival", "sys", "tensorA", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "yaml" ], "_sysdeps": [ { "shlib": "libtbb", "package": "libtbb12", "headers": "libtbb-dev", "source": "onetbb", "version": "2022.3.0-2", "name": "onetbb", "homepage": "https://uxlfoundation.github.io/oneTBB/", "description": "parallelism library for C++ - runtime files" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "rstanbdp", "_universes": [ "piodag" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.2", "date": "2026-09-30T07:37:55.000Z", "distro": "resolute", "arch": "aarch64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/386c870744ea7d1f1a43b1af8d30be2923b4ad3f975d9b7b59b54e97e855a20b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.7.0", "os": "linux", "version": "0.0.2", "date": "2026-09-30T07:37:58.000Z", "distro": "resolute", "arch": "x86_64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/ba6a2b08fff79a7146b576d3fcf043da546cbb949f12f787cd13664b9a493113", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.6.1", "os": "linux", "version": "0.0.2", "date": "2026-09-30T07:37:56.000Z", "distro": "resolute", "arch": "aarch64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/fe1cbbe13a0ce64c35c0cdac66e78ac54c2aef79cbaacd9292788ff2bc697e99", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.6.1", "os": "linux", "version": "0.0.2", "date": "2026-09-30T07:38:01.000Z", "distro": "resolute", "arch": "x86_64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/e13dbd531b3021e4d7ed2f50ad81d222d6a97445fe28a6d4df8670a44b0283f6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.5.3", "os": "mac", "version": "0.0.2", "date": "2026-09-30T08:08:56.000Z", "arch": "aarch64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/7bcad71d9401a61abd57ef6279af562d078ab9038d26efb58740958c38fa2083", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.5.3", "os": "mac", "version": "0.0.2", "date": "2026-09-30T07:55:04.000Z", "arch": "x86_64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/9b4e3faa956ef861ebfc2f488b7426f52d4a7749477842caa1a0c67e776600e2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.6.1", "os": "mac", "version": "0.0.2", "date": "2026-09-30T08:05:07.000Z", "arch": "aarch64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/26fbc86d29ba3f0bd905e02408e2c435db2d797c5e787c262ee610c49fe9ff7d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.6.1", "os": "mac", "version": "0.0.2", "date": "2026-09-30T07:58:58.000Z", "arch": "x86_64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/09bd9e14ef5100466eeafa08a8fc361f57d1484ef5f6fd2b6bdc85fa252be32e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.2", "date": "2026-09-30T07:38:09.000Z", "arch": "emscripten", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/8819b5ae43687aa9f928d85172242eb1b51dbc8b09f1fbb53a60cfc4d8a7d441", "status": "success", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.7.0", "os": "win", "version": "0.0.2", "date": "2026-09-30T07:40:19.000Z", "arch": "aarch64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/b8402b0601c1b6d966e51f75299082b6379ab06a4ce16cfefa31abe88b0b3a91", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.7.0", "os": "win", "version": "0.0.2", "date": "2026-09-30T07:37:33.000Z", "arch": "x86_64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/396771952cd3c18a89d1a973c59d994ff0f059534a32fab2db6711241d936f38", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.5.3", "os": "win", "version": "0.0.2", "date": "2026-09-30T07:36:38.000Z", "arch": "x86_64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/c3bf3d49872d9b145f03d33afa9a6f8971f461c29e319e3a9431246ff31dbe6d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.6.1", "os": "win", "version": "0.0.2", "date": "2026-09-30T07:39:53.000Z", "arch": "aarch64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/e6fdfda8d744e1d26d05f8790a815724098d91bb42a8104235da200f70e11aeb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" }, { "r": "4.6.1", "os": "win", "version": "0.0.2", "date": "2026-09-30T07:36:34.000Z", "arch": "x86_64", "commit": "bd25fd4d795a544ac1bcea3bb883b8413684dae5", "fileid": "https://r2.ropensci.org/585b561a69fb877df12813d559e627a6111882426a9f54220059e73e6dda2caf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/piodag/actions/runs/36683848906" } ] }